Where the hell did rust come from? No, rust does not effect rubber......
I would be more inclined to blame stress. Maybe the engine bay isn't 100% straight.....I've had trouble installing engines in dsm because of previous accidents. Getting the mounts to line up was impossible. I had to use a lot of pry bar....I've had the same mounts in my Galant for 6 years now, no signs of this happening as of yet.....
OR, your other motor mounts are sloppy.