I went with 2/0ga for the main wire to the fuse-junction thing in the engine bay...I also used it for the ground, attaching it to the strut stud, as many others have done...
IMO, it's better to be larger than you need, rather than too small..in DC applications, voltage is lost relatively quickly in length and at 15ft. or so, it can make a difference...add heat, dirty connections, etc. and the starter and such really can have a strain...Given two equal sizes, the one with more strands (i.e. welding wire) will outperform the regular wire and 'solid' variety...grounds and clean connections are critical as well and you can never have too many...
I ran mine thru the back seat opening, under the rear seat, under the carpet near the rocker area and up thru the factory firewall, where all the ECU wires run (tricky to get thru, but it worked)...it's like it was made for a remote battery!
These cars seem pretty forgiving though with battery in the trunk...in my Chevelle, with the batt. in the trunk and the pass. header primary like 1/4" from the starter solenoid, let's just say I had many issues with starting (even with 0ga, starter relay and finally a remote solenoid) /ubbthreads/images/graemlins/grin.gif