which "JDM" computer exactly? There's about 5 of them depending if it's the early model with 14b turbo and 5450cc injectors, facelift model with the same 14b and 450cc injectors but up on power, the automatic facelift model, right through to the evolution 510cc and 16g model.
A part number of the JDM computer you are thinking of using would help, and here's a site which shows each different kind of JDM VR-4 along with the part number of ECU they would use here
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I believe the JDM ECU will have issues with the lack of the 'cyclone' circuit, and another circuit on the USDM harness could be wired in place and cause troubles. The Evolution spec MD165808 ECU would be fine with the 510cc injectors and maybe the 2G MAF.