Quoting TurboTony:
Have you seen anyone successfully run the outlet underneath? I made it through 5 or 6 pages of beautiful GVR4's in the gallery and didn't see any.
To answer your question, yes. Brianawd runs his like this. turbowop has the same turbo and intercooler core and runs his over the top.
Quoting DailyDSM:
A better question is does anyone sell a stock route (over the EM) J-pipe for a 14b/16g with and output diamter of 2.5"? Seems like the only option I can find is the Dejon 2.5" that drops it down underneath the exhaust manifold.
ETS has a stock like 2.5 J-pipe. It also replaces the rubber piece that runs over the manifold. A small diameter pipe is welded to the flange, but it expands to 2.5" almost immediatly. Im sure they can get one to you if you call them, but otherwise, Ive only seen it sold with the kit.
second pipe from the bottom.